Move SNAP research to /sources, remove Cotbusser Ostsee and include all notebooks in _toc.yml

Cotbusser Ostsee/link_list.txt

@@ -1,29 +0,0 @@
-https://scihub.copernicus.eu/apihub/odata/v1/Products('297fbd5d-7aee-4458-bf92-0fabb2390686')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('beba8823-384b-40c4-9a46-f805c93e4c0b')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('0cd55e83-661a-4e6d-9260-090f181dba98')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('0c926d46-b8c3-4389-92c5-d55eeae24d27')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('f0357a27-f2ae-4cae-964a-4a239063e00e')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('94bae100-882b-4879-9803-f80e5836ed03')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('81a0f8d2-8e26-4a11-b237-2d77278a0201')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('a7e88612-b5f7-43f7-aeb9-c3a1f59988a9')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('4720dc74-5dcd-439f-98f6-ccce1f9e91ba')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('d3d8ca59-1ea2-423f-b5ca-0a796189de77')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('cb092920-5135-4d1a-8022-b3b9adeb0c71')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('a76efffe-dee1-4d90-bb0e-fe3ae2fd203e')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('b861e6c9-de3b-4b13-aadb-a5f307977c12')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('a096a190-a148-43ba-bf76-99d009c481c8')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('dbc5195f-e37e-4f7c-a2bc-4f8744875a00')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('2ccd7b68-a9ff-45de-91b2-532f63de58ad')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('b84b8e66-5788-47ad-82ec-43b30b81f648')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('768a8fc7-26f2-4daf-b326-fad0eb373932')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('a13c0d72-b29d-4ce4-95cd-72c6e6a0ef93')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('da264968-83e8-49e8-bd12-d1be4ea11d98')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('14ad7da9-61e3-49df-a093-d122f3d7741b')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('027baf71-82c7-4554-866a-93c939e037a6')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('fc303b98-b4d9-4e6a-a920-0cd5896f4b29')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('2fe656bf-98c1-449c-bb50-a0511f28335d')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('97f38784-462a-4f55-8015-64b700cad233')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('de1eb034-6504-4779-894b-cad441ca47df')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('7c42b169-f1fc-47cc-b853-7e3e529d5242')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('96dc4323-92d5-4e2a-a6c5-177b167431a3')/$value
-https://scihub.copernicus.eu/apihub/odata/v1/Products('ddb91569-8c5e-4fe0-a227-b0454f56c2b8')/$value

_toc.yml

@@ -1,10 +1,26 @@
 # Table of contents
 # Learn more at https://jupyterbook.org/customize/toc.html
 - file: README
-- part: "Data retrieval and processing"
+  title: "Remote Sensing for Journalism"
+- part: "Data Retrieval and Processing"
   chapters:
   - file: "sources/01 Data retrieval and processing.md"
   - file: "sources/01a Download from Scihub.ipynb"
   - file: "sources/01b Plot downloaded products.ipynb"
   - file: "sources/01c Coverage analysis.ipynb"
+  - file: "sources/1d Brandenburg mosaic.ipynb"
   - file: "sources/01 True-color pipeline.ipynb"
+- part: "Band Maths"
+  chapters:
+  - file: "sources/02a NDVI.ipynb"
+  - file: "sources/02b Timeseries.ipynb"
+  - file: "sources/02c Corrupted Zip File.ipynb"
+  - file: "sources/02c Multithreading.ipynb"
+  - file: "sources/02d Cloud Masks.ipynb"
+  - file: "sources/02 Spectral Indices.ipynb"
+- part: "Burn Ratio Calculations"
+  chapters:
+  - file: "sources/03a Forest Fire Product Downloads.ipynb"
+  - file: "sources/03b Example Initialized Downloads.ipynb"
+  - file: "sources/03b Forest Fires 2018 and 2019.ipynb"
+  - file: "sources/03c dNBR.ipynb"

sources/01 Data retrieval and processing.md

@@ -2,6 +2,6 @@
 
 The first chapter contains notebooks that document the data retrieval process from the Copernicus Open Access Hub.
 
-It explains how to use [`sentinelsat`](https://github.com/sentinelsat/sentinelsat) library to interact with the API: How to specify what kind of data we are interested in with the aide of open map data from [OpenStreetMap](https://www.openstreetmap.org/) and how to download it. It then goes on to show how to use [`rasterio`](https://rasterio.readthedocs.io/) and [`matplotlib`](https://matplotlib.org/stable/index.html) to work with the data.
+It explains how to use [`sentinelsat`](https://github.com/sentinelsat/sentinelsat) library to interact with the API: How to specify what kind of data we are interested in with the aide of open map data from [OpenStreetMap](https://www.openstreetmap.org/) and [`geopandas`](https://geopandas.org/) and how to download it. It then goes on to show how to use [`rasterio`](https://rasterio.readthedocs.io/) and [`matplotlib`](https://matplotlib.org/stable/index.html) to work with the data.
 
-The Sentinel-2 satellite captures light in visible and invisible parts of the spectrum. This can be used to derive different kinds of useful information about ground-level phenomena. This chapter will detail how to use it to create true-color images for different moments in time.
+The Sentinel-2 satellite captures light in visible and invisible parts of the spectrum. This can be used to derive different kinds of useful information about ground-level phenomena. This chapter will detail how to use it to create true-color images for different moments in time.

sources/XX SNAP via Python.ipynb

@@ -4,10 +4,12 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "In order to configure this, run the following command:\n",
+    "# SNAP Tools and Python 3\n",
     "\n",
-    "```\n",
+    "The SNAP python bindings can be installed using the following command:\n",
-    "/usr/local/snap/bin/snapp-conf $(wich python2)\n",
+    "\n",
+    "``` bash\n",
+    "/usr/local/snap/bin/snapp-conf \"$(which python2)\"\n",
     "```"
    ]
   },
@@ -34,7 +36,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "<span color='#fbb'>*Important:*</span> This only works in Pyhton 2 and is therefore not further explored. Trying the above command with `python3` yielded the following error:"
+    "However, when trying to configure them a modern python version (i.e. `python3` instead of `python2`), the following error is raised:"
    ]
   },
   {
@@ -92,7 +94,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.5"
+   "version": "3.8.6"
   }
  },
  "nbformat": 4,